python - 在biopython中退出代码11

python - 在biopython中退出代码11,第1张

有人可以帮我理解这个错误信息吗?它来自Beaker Notebook的IPython单元,通过biopython在命令行中运行T-cofee。

Non-zero return code 11 from 't_coffee -output clustalw -infile /Applications/Beaker.app/Contents/Resources/dist/src/main/web/uniprot-ornithine transcarbamylase-2.fasta -outfile /Applications/Beaker.app/Contents/Resources/dist/src/main/web/aligned.aln', message 'PROGRAM: T-COFFEE Version_11.00.8cbe486 (2014-08-12 21:55:14 - Revision 8cbe486 - Build 470)'
Non-zero return code 11 from 't_coffee -output clustalw -infile /Applications/Beaker.app/Contents/Resources/dist/src/main/web/uniprot-ornithine transcarbamylase-2.fasta -outfile /Applications/Beaker.app/Contents/Resources/dist/src/main/web/aligned.aln', message 'PROGRAM: T-COFFEE Version_11.00.8cbe486 (2014-08-12 21:55:14 - Revision 8cbe486 - Build 470)'
---------------------------------------------------------------------------
ApplicationError                          Traceback (most recent call last)
<ipython-input-1-5970d9b8d2e2> in <module>()
     97 tcoffee_cline = TCoffeeCommandline(infile="/Applications/Beaker.app/Contents/Resources/dist/src/main/web/%s"%(fName2), output="clustalw", outfile="/Applications/Beaker.app/Contents/Resources/dist/src/main/web/aligned.aln")
     98 #executes command line wrapper
---> 99 tcoffee_cline()
    100 #read in the alignment file
    101 alignment = AlignIO.read(open("/Applications/Beaker.app/Contents/Resources/dist/src/main/web/aligned.aln"), "clustal")

//anaconda/lib/python2.7/site-packages/Bio/Application/__init__.pyc in __call__(self, stdin, stdout, stderr, cwd, env)
    513         if return_code:
    514             raise ApplicationError(return_code, str(self),
--> 515                                    stdout_str, stderr_str)
    516         return stdout_str, stderr_str
    517 

ApplicationError: Non-zero return code 11 from 't_coffee -output clustalw -infile /Applications/Beaker.app/Contents/Resources/dist/src/main/web/uniprot-ornithine transcarbamylase-2.fasta -outfile /Applications/Beaker.app/Contents/Resources/dist/src/main/web/aligned.aln', message 'PROGRAM: T-COFFEE Version_11.00.8cbe486 (2014-08-12 21:55:14 - Revision 8cbe486 - Build 470)'

如果有任何问题,请尽快回答。 谢谢!

最佳答案:

0 个答案:

没有答案
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